Gimp: Color to alpha

You do use the Color to Alpha tool, but you also need to isolate the color using the Select by color tool. Here is how I accomplished replacing a specific color to transparent:

  • Create a new, transparent layer at the bottom of the layer stack.
  • Use the Select by Color tool to isolate the color. Be sure to set threshold = 0.0;
  • Now that you have the selection, use the Color to alpha tool, and use the eyedropper (after double clicking the "from" color) to select your color.
  • Click OK (twice).

Let me know if this works for you, or if you need me to clarify any further.