Common xlabel/ylabel for matplotlib subplots

This looks like what you actually want. It applies the same approach of this answer to your specific case:

import matplotlib.pyplot as plt

fig, ax = plt.subplots(nrows=3, ncols=3, sharex=True, sharey=True, figsize=(6, 6))

fig.text(0.5, 0.04, 'common X', ha='center')
fig.text(0.04, 0.5, 'common Y', va='center', rotation='vertical')

Since I consider it relevant and elegant enough (no need to specify coordinates to place text), I copy (with a slight adaptation) an answer to another related question.

import matplotlib.pyplot as plt
fig, axes = plt.subplots(5, 2, sharex=True, sharey=True, figsize=(6,15))
# add a big axis, hide frame
fig.add_subplot(111, frameon=False)
# hide tick and tick label of the big axis
plt.tick_params(labelcolor='none', which='both', top=False, bottom=False, left=False, right=False)
plt.xlabel("common X")
plt.ylabel("common Y")

This results in the following (with matplotlib version 2.2.0):

New in Matplotlib v3.4 (pip install matplotlib --upgrade)

supxlabel and supylabel

    fig.supxlabel('common_x')
    fig.supylabel('common_y')

See example:

import matplotlib.pyplot as plt

for tl, cl in zip([True, False, False], [False, False, True]):
    fig = plt.figure(constrained_layout=cl, tight_layout=tl)

    gs = fig.add_gridspec(2, 3)

    ax = dict()

    ax['A'] = fig.add_subplot(gs[0, 0:2])
    ax['B'] = fig.add_subplot(gs[1, 0:2])
    ax['C'] = fig.add_subplot(gs[:, 2])

    ax['C'].set_xlabel('Booger')
    ax['B'].set_xlabel('Booger')
    ax['A'].set_ylabel('Booger Y')
    fig.suptitle(f'TEST: tight_layout={tl} constrained_layout={cl}')
    fig.supxlabel('XLAgg')
    fig.supylabel('YLAgg')
    
    plt.show()

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