What does Apple want for the WWDC Scholarship application uploads?
I think Apple wants the people that apply to know how the Xcode tool chain works and have invested enough time to be able to submit a real app for review rather than being people that can fill out a web form to apply for a ticket.
Now, since you've found us and asked for help with lots of detail, I think you are very close to qualifying for a chance to win a ticket, but you might need to ask a second question staking out one specific step that you don't quite get.
That will entice someone who is an expert to help you over the one item you have identified as the single biggest obstacle. At that point, you are free to ask again with your next biggest obstacle, but as you have surmised, asking too much of an answerer by submitting a "wall of question" is generally frowned upon on Q&A sites. Your nice pictures do help ameliorate the large amount of text, but it still seems like a three part question (or more) to me as written.
Lots of detail does not imply lots of thinking. We can't do your thinking for you, but we can attempt to help if you've shown clearly what you think and what specifically you need help with.
Thanks to everyone at Stack Exchange, I won a scholarship.
Line for keynote. A quarter of it.
They fed us quite well (Donuts and tasty bread things), and then they let us in. Then they fed us again.
Currently, I'm working on an iOS SE app using the knowledge I gained there. More info here.