How do I remove a specific element from a JSONArray?

Try this code

ArrayList<String> list = new ArrayList<String>();     
JSONArray jsonArray = (JSONArray)jsonObject; 

if (jsonArray != null) { 
   int len = jsonArray.length();
   for (int i=0;i<len;i++){ 
    list.add(jsonArray.get(i).toString());
   } 
}
//Remove the element from arraylist
list.remove(position);
//Recreate JSON Array
JSONArray jsArray = new JSONArray(list);

Edit: Using ArrayList will add "\" to the key and values. So, use JSONArray itself

JSONArray list = new JSONArray();     
JSONArray jsonArray = new JSONArray(jsonstring); 
int len = jsonArray.length();
if (jsonArray != null) { 
   for (int i=0;i<len;i++)
   { 
       //Excluding the item at position
        if (i != position) 
        {
            list.put(jsonArray.get(i));
        }
   } 
}

In case if someone returns with the same question for Android platform, you cannot use the inbuilt remove() method if you are targeting for Android API-18 or less. The remove() method is added on API level 19. Thus, the best possible thing to do is to extend the JSONArray to create a compatible override for the remove() method.

public class MJSONArray extends JSONArray {

    @Override
    public Object remove(int index) {

        JSONArray output = new JSONArray();     
        int len = this.length(); 
        for (int i = 0; i < len; i++)   {
            if (i != index) {
                try {
                    output.put(this.get(i));
                } catch (JSONException e) {
                    throw new RuntimeException(e);
                }
            }
        } 
        return output;
        //return this; If you need the input array in case of a failed attempt to remove an item.
     }
}

EDIT As Daniel pointed out, handling an error silently is bad style. Code improved.