Install OpenMPI from repository with GCC instead of Intel

As it seems, the Intel mpicc.openmpi overwrote the official one from repository or one of its linked libraries.

Here is my output of a official install from repository:

  ~$ dpkg -S /usr/bin/mpicc.openmpi
  libopenmpi-dev: /usr/bin/mpicc.openmpi

  ~$ ldd /usr/bin/mpicc.openmpi
      linux-vdso.so.1 =>  (0x00007ffd785f4000)
      libopen-pal.so.13 => /usr/lib/libopen-pal.so.13 (0x00007ff1d848d000)
      libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007ff1d8270000)
      libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007ff1d7ea6000)
      libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007ff1d7ca2000)
      librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007ff1d7a9a000)
      libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007ff1d7896000)
      libhwloc.so.5 => /usr/lib/x86_64-linux-gnu/libhwloc.so.5 (0x00007ff1d765c000)
      /lib64/ld-linux-x86-64.so.2 (0x000056499326f000)
      libnuma.so.1 => /usr/lib/x86_64-linux-gnu/libnuma.so.1 (0x00007ff1d7450000)
      libltdl.so.7 => /usr/lib/x86_64-linux-gnu/libltdl.so.7 (0x00007ff1d7246000)

It does not relay on those missing libraries.

To fix it you can reinstall libopenmpi:

  sudo apt-get install --reinstall openmpi-bin libopenmpi-dev

Also notice /usr/local/lib/libopen-pal.so.13. It's in /usr/local/lib/ folder so it has higher priority then official one in /usr/lib/, compatibility may be broken.

Check for all sub-versions using

  ls -l /usr/local/lib/libopen-pal.so.13*

then rename them, example

  sudo mv /usr/local/lib/libopen-pal.so.13 /usr/local/lib/libopen-pal.so.13.backup