What do the percentages mean in the overall leaderboards?

Solution 1:

32 cubes + 32 anticubes + 3 heart cube pieces @ 3.125% apiece => 209.4% max

  • 32 cubes net 100% for the first ending
  • 64 cubes net 200% for the second/final ending
  • Three heart cube pieces add +9.4% (optional, Easter eggs)

  • Anything above that 209.4% is from a broken anticube.

Source: I'm smallest kiss (the first one above the max)

Solution 2:

There is a glitch that allows you to get one anti-cube repeatedly.