Is there an adverb for 'customised' or 'bespoke'
Solution 1:
Your best option is probably specially
2a : for a special purpose dresses made specially for the occasion
2b : in particular : SPECIFICALLY made specially for you
Thus
The items that have been specially manufactured are safely stored.
or more succinctly
Your specially-manufactured items are safely stored.
You have to be careful, because people can misuse "specially" when they mean "especially", which has a different meaning.
Another option is individually. The adjective individual has a sense
1b. Intended for one person
If two words are OK, you could go with to specification or its abbreviation "to spec". The noun specification has the sense
2a: a detailed precise presentation of something or of a plan or proposal for something
With this one you could specify whose specification(s):
The items have been manufactured to your specifications, and are safely stored.
(All quotations from Merriam-Webster).