Rsync to macOS Sierra fails
Solution 1:
As Mark mentioned in his comment, "You can make the drive case sensitive but then some apps will not work" and Matteo showing you a list from Disk Utility, let me offer you an alternative to changing the format of the existing physical volume.
I use a sparse bundle (.sparsebundle) formatted as Mac OS Extended (Case-sensitive, Journaled) to maintain a case sensitive volume that's accessible on my Mac. It could also be a sparse or regular disk image file (.sparseimage/.dmg) vs. the sparse bundle, whichever suits your needs better.
In macOS Sierra's Disk Utility, click File > New Image > Blank Image... then in the settings sheet you can define the properties of the image file.
You can have it mount automatically when you login by adding it to your Login Items (System Preferences > User & Groups > $USER > Login Items).
Note that I use the sparse bundle because I find its easier to compact using hdiutil compact filename.sparsebundle
to regain disk space as needed because it uses 8 MiB bands vs. a single file, which works better when the physical disk is getting to full.
Solution 2:
In Sierra but also in previous system you can choose to format the drive as case sensitive or case insensitive. Default is case insensitive.
The issue is not specific to Sierra but on how the partition is formatted: