MobaXterm captures hotkeys when I am in another program

Solution 1:

There's no built-in option to disable the pop-up terminal, but you can disable/change the specific hotkey that is interfering:

  1. Click Settings --> Keyboard Shortcuts.
  2. Select a hotkey to be modified (Show / hide popup terminal in your case).
  3. Select the "Edit Keyboard Shortcut" drop down box and select a different hotkey or <none> to disable.
  4. Restart MobaXterm