The cause of "bad magic number" error when loading a workspace and how to avoid it?

I tried to load my R workspace and received this error:

Error: bad restore file magic number (file may be corrupted) -- no data loaded
In addition: Warning message:
file ‘WORKSPACE_Wedding_Weekend_September’ has magic number '#gets'
   Use of save versions prior to 2 is deprecated 

I'm not particularly interested in the technical details, but mostly in how I caused it and how I can prevent it in the future. Here's some notes on the situation:

  1. I'm running R 2.15.1 on a MacBook Pro running Windows XP on a bootcamp partition.
  2. There is something obviously wrong this workspace file, since it weighs in at only ~80kb while all my others are usually >10,000
  3. Over the weekend I was running an external modeling program in R and storing its output to different objects. I ran several iterations of the model over the course of several days, eg output_Saturday <- call_model()
  4. There is nothing special to the model output, its just a list with slots for betas, VC-matrices, model specification, etc.

I got that error when I accidentally used load() instead of source() or readRDS().


Also worth noting the following from a document by the R Core Team summarizing changes in versions of R after v3.5.0 (here):

R has new serialization format (version 3) which supports custom serialization of ALTREP framework objects... Serialized data in format 3 cannot be read by versions of R prior to version 3.5.0.

I encountered this issue when I saved a workspace in v3.6.0, and then shared the file with a colleague that was using v3.4.2. I was able to resolve the issue by adding "version=2" to my save function.


Assuming your file is named "myfile.ext"

If the file you're trying to load is not an R-script, for which you would use

source("myfile.ext")

you might try the readRDSfunction and assign it to a variable-name:

my.data <- readRDS("myfile.ext")

The magic number comes from UNIX-type systems where the first few bytes of a file held a marker indicating the file type.

This error indicates you are trying to load a non-valid file type into R. For some reason, R no longer recognizes this file as an R workspace file.