Solution 1:

If you don't see it when you open %systemroot% but you do when you open \domain.x then \domain.x is probably showing the folder from another DC. That leads me to believe you might have a problem with DFS Replication.https://social.technet.microsoft.com/Forums/en-US/58b8cdc3-a990-46c7-a70e-a51fd6965537/sysvol-and-netlogon-shares-missing-from-new-domain-controllers-using-dfrs

You can verify DFS Replication is being used by running dfsrmig.exe /getglobalstate. If it is installed on the FSMO role master but not the new domain controller, you will should install it on the new domain controller so DFS Replication can run between the two DCs. You should restart the new DC once you install DFS.https://social.technet.microsoft.com/Forums/en-US/58b8cdc3-a990-46c7-a70e-a51fd6965537/sysvol-and-netlogon-shares-missing-from-new-domain-controllers-using-dfrs

After you do that you should perform a replication between the new DC and the original DC. To do that you need to go to Active Directory Sites and Services, expand all objects in the left part of the window, find the server you want to replicate to, go to NTDS Settings, select the server you want to replicate from, and select Replicate Now.https://technet.microsoft.com/en-us/library/cc816926(v=ws.10).aspx

If you find the SYSVOL folder on the new DC but do not see anything in the SYSVOL folder on the new DC, then you can try running wmic /namespace:\\root\microsoftdfs path dfsrVolumeConfig where volumeGuid="YOURGUID" call ResumeReplication to resume replication.https://social.technet.microsoft.com/Forums/en-US/58b8cdc3-a990-46c7-a70e-a51fd6965537/sysvol-and-netlogon-shares-missing-from-new-domain-controllers-using-dfrs

Let me know if this fixes things.