Suddenly unable to write to usb sticks, the /media structure changed

About a month ago I have run some regular updates on my Kubuntu 16.10 machine (unfortunately I can't remember the names of the packages). Now, a month later, I tried to write some data on my USB stick and it suddenly doesn't work.

The USB disk is recognized and I am able to connect it simply using the GUI, for example by clicking the "connect drive" icon in Dolphin or Konqueror. I am able to read data from the USB stick, but when I try to copy a file to the stick, i get following errors (waran is my username, A874-2FAD is the name of the USB stick):

Konqueror:

Access denied. Could not write to '/media/waran/A874-2FAD'

Copying using command line (cp testfile.jpg /media/waran/A874-2FAD/):

cp: cannot create regular file '/media/waran/A874-2FAD/testfile.jpg': Permission denied

I have tried it (unsuccessfully) with 4 different USB sticks, 2 SD cards (directly through the card reader on my notebook or using an external card reader) and a CF card (using an external card reader). I have dual boot on this computer, writing to sticks from Windows 10 worked just fine. If it helps narrowing the problem, I am able to print from Kubuntu using an USB cable.

Also I noticed, that I have some new folders in the /media directory. Previously /media/ contained one folder called waran/, in this folder were only the currently connected USBs.

Now it looks like this (ls -aRl):

.:
total 44
drwxr-xr-x  11 root  root  4096 Oct 22 20:36 .
drwxr-xr-x  25 root  root  4096 Dec 20 21:47 ..
lrwxrwxrwx   1 root  root    45 Oct 15 13:46 .directory -> /etc/kubuntu-default-settings/directory-media
lrwxrwxrwx   1 root  root    42 Oct 15 13:46 .hidden -> /etc/kubuntu-default-settings/hidden-media
lrwxrwxrwx   1 root  root     4 Oct 22 20:36 usb -> usb0
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb0
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb1
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb2
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb3
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb4
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb5
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb6
drwxr-xr-x   2 root  root  4096 Oct 22 20:36 usb7
drwxr-x---+  4 waran waran 4096 Jan  5 21:27 waran

./usb0:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb1:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb2:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb3:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb4:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb5:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb6:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./usb7:
total 8
drwxr-xr-x  2 root root 4096 Oct 22 20:36 .
drwxr-xr-x 11 root root 4096 Oct 22 20:36 ..

./waran:
total 20
drwxr-x---+  4 waran waran 4096 Jan  5 21:27 .
drwxr-xr-x  11 root  root  4096 Oct 22 20:36 ..
drwxr-xr-x   2 root  root  8192 Jan  1  1970 A874-2FAD
drwxr-xr-x   2 waran waran 4096 Oct 22 22:19 System\x20Reserved

./waran/A874-2FAD:
total 12
drwxr-xr-x  2 root  root  8192 Jan  1  1970 .
drwxr-x---+ 4 waran waran 4096 Jan  5 21:27 ..

./waran/System\x20Reserved:
total 8
drwxr-xr-x  2 waran waran 4096 Oct 22 22:19 .
drwxr-x---+ 4 waran waran 4096 Jan  5 21:27 ..

Any advice? Why did the structure suddenly change? How can I write to my USB sticks directly from Kubuntu?

Edit: Thanks to sudodus's answer I realized, that as root I have the write permissions and I am able to write on the pendrive. Changing /media/waran permissions didn't work, mounting the drive manually through command-line didn't change the permission issue either.

Edit: Result of df after unmounting the USB stick:

Filesystem     1K-blocks      Used Available Use% Mounted on
udev             1948092         0   1948092   0% /dev
tmpfs             394580     26256    368324   7% /run
/dev/sda5       23706164  15941220   6537672  71% /
tmpfs            1972892     40900   1931992   3% /dev/shm
tmpfs               5120         4      5116   1% /run/lock
tmpfs            1972892         0   1972892   0% /sys/fs/cgroup
/dev/sda6      780771600 450109520 290978140  61% /home
tmpfs             394576         0    394576   0% /run/user/119
tmpfs             394576        24    394552   1% /run/user/1000

Result of df after mounting the USB stick:

Filesystem     1K-blocks      Used Available Use% Mounted on
udev             1948092         0   1948092   0% /dev
tmpfs             394580     26256    368324   7% /run
/dev/sda5       23706164  15941248   6537644  71% /
tmpfs            1972892     41156   1931736   3% /dev/shm
tmpfs               5120         4      5116   1% /run/lock
tmpfs            1972892         0   1972892   0% /sys/fs/cgroup
/dev/sda6      780771600 450109520 290978140  61% /home
tmpfs             394576         0    394576   0% /run/user/119
tmpfs             394576        24    394552   1% /run/user/1000
/dev/sdb1        7849228    263772   7585456   4% /mnt/sd1

So it seems the pendrive was successfully unmounted and mounted, still I am not able to edit the contents without root permissions.


After not getting any new ideas here anymore, I reposted the question to Ubuntu Forums. https://ubuntuforums.org/showthread.php?t=2348773

Coffeecat advised me to uninstall the usbmount package (apt-get remove usbmount). Now I am able to change the content of a pendrive without root permissions.