Use tryCatch skip to next value of loop upon error?
I've read a few other SO questions about tryCatch
and cuzzins, as well as the documentation:
- Exception handling in R
- catching an error and then branching logic
- How can I check whether a function call results in a warning?
- Problems with Plots in Loop
but I still don't understand.
I'm running a loop and want to skip to next
if any of a few kinds of errors occur:
for (i in 1:39487) {
# EXCEPTION HANDLING
this.could.go.wrong <- tryCatch(
attemptsomething(),
error=function(e) next
)
so.could.this <- tryCatch(
doesthisfail(),
error=function(e) next
)
catch.all.errors <- function() { this.could.go.wrong; so.could.this; }
catch.all.errors;
#REAL WORK
useful(i); fun(i); good(i);
} #end for
(by the way, there is no documentation for next
that I can find)
When I run this, R
honks:
Error in value[[3L]](cond) : no loop for break/next, jumping to top level
What basic point am I missing here? The tryCatch
's are clearly within the for
loop, so why doesn't R
know that?
The key to using tryCatch
is realising that it returns an object. If there was an error inside the tryCatch
then this object will inherit from class error
. You can test for class inheritance with the function inherit
.
x <- tryCatch(stop("Error"), error = function(e) e)
class(x)
"simpleError" "error" "condition"
Edit:
What is the meaning of the argument error = function(e) e
? This baffled me, and I don't think it's well explained in the documentation. What happens is that this argument catches any error messages that originate in the expression that you are tryCatch
ing. If an error is caught, it gets returned as the value of tryCatch
. In the help documentation this is described as a calling handler
. The argument e
inside error=function(e)
is the error message originating in your code.
I come from the old school of procedural programming where using next
was a bad thing. So I would rewrite your code something like this. (Note that I removed the next
statement inside the tryCatch
.):
for (i in 1:39487) {
#ERROR HANDLING
possibleError <- tryCatch(
thing(),
error=function(e) e
)
if(!inherits(possibleError, "error")){
#REAL WORK
useful(i); fun(i); good(i);
}
} #end for
The function next
is documented inside ?
for`.
If you want to use that instead of having your main working routine inside an if
, your code should look something like this:
for (i in 1:39487) {
#ERROR HANDLING
possibleError <- tryCatch(
thing(),
error=function(e) e
)
if(inherits(possibleError, "error")) next
#REAL WORK
useful(i); fun(i); good(i);
} #end for
I found other answers very confusing. Here is an extremely simple implementation for anyone who wants to simply skip to the next loop iteration in the event of an error
for (i in 1:10) {
skip_to_next <- FALSE
# Note that print(b) fails since b doesn't exist
tryCatch(print(b), error = function(e) { skip_to_next <<- TRUE})
if(skip_to_next) { next }
}
for (i in -3:3) {
#ERROR HANDLING
possibleError <- tryCatch({
print(paste("Start Loop ", i ,sep=""))
if(i==0){
stop()
}
}
,
error=function(e) {
e
print(paste("Oops! --> Error in Loop ",i,sep = ""))
}
)
if(inherits(possibleError, "error")) next
print(paste(" End Loop ",i,sep = ""))
}