"We merely skimmed the surface of the cities." Does this make sense?

Solution 1:

It is an idiomatic use that is reliably understood in the manner you suggest: that you only had time to see or feel a few aspects of the cities.

Skim = to read or look at something quickly to understand the main points, without studying it in detail:

Several dictionaries of idiom show “skim the surface” as something like:

skim the surface (of something)

To do, engage with, or understand something to only a minimal or superficial degree.

Free dictionary