Python Pandas - Find difference between two data frames

I have two data frames df1 and df2, where df2 is a subset of df1. How do I get a new data frame (df3) which is the difference between the two data frames?

In other word, a data frame that has all the rows/columns in df1 that are not in df2?

By using drop_duplicates

pd.concat([df1,df2]).drop_duplicates(keep=False)

Update :

The above method only works for those data frames that don't already have duplicates themselves. For example:

df1=pd.DataFrame({'A':[1,2,3,3],'B':[2,3,4,4]})
df2=pd.DataFrame({'A':[1],'B':[2]})

It will output like below , which is wrong

Wrong Output :

pd.concat([df1, df2]).drop_duplicates(keep=False)
Out[655]: 
   A  B
1  2  3

Correct Output

Out[656]: 
   A  B
1  2  3
2  3  4
3  3  4

How to achieve that?

Method 1: Using isin with tuple

df1[~df1.apply(tuple,1).isin(df2.apply(tuple,1))]
Out[657]: 
   A  B
1  2  3
2  3  4
3  3  4

Method 2: merge with indicator

df1.merge(df2,indicator = True, how='left').loc[lambda x : x['_merge']!='both']
Out[421]: 
   A  B     _merge
1  2  3  left_only
2  3  4  left_only
3  3  4  left_only

For rows, try this, where Name is the joint index column (can be a list for multiple common columns, or specify left_on and right_on):

m = df1.merge(df2, on='Name', how='outer', suffixes=['', '_'], indicator=True)

The indicator=True setting is useful as it adds a column called _merge, with all changes between df1 and df2, categorized into 3 possible kinds: "left_only", "right_only" or "both".

For columns, try this:

set(df1.columns).symmetric_difference(df2.columns)

Accepted answer Method 1 will not work for data frames with NaNs inside, as pd.np.nan != pd.np.nan. I am not sure if this is the best way, but it can be avoided by

df1[~df1.astype(str).apply(tuple, 1).isin(df2.astype(str).apply(tuple, 1))]

It's slower, because it needs to cast data to string, but thanks to this casting pd.np.nan == pd.np.nan.

Let's go trough the code. First we cast values to string, and apply tuple function to each row.

df1.astype(str).apply(tuple, 1)
df2.astype(str).apply(tuple, 1)

Thanks to that, we get pd.Series object with list of tuples. Each tuple contains whole row from df1/df2. Then we apply isin method on df1 to check if each tuple "is in" df2. The result is pd.Series with bool values. True if tuple from df1 is in df2. In the end, we negate results with ~ sign, and applying filter on df1. Long story short, we get only those rows from df1 that are not in df2.

To make it more readable, we may write it as:

df1_str_tuples = df1.astype(str).apply(tuple, 1)
df2_str_tuples = df2.astype(str).apply(tuple, 1)
df1_values_in_df2_filter = df1_str_tuples.isin(df2_str_tuples)
df1_values_not_in_df2 = df1[~df1_values_in_df2_filter]