Window-borders disappears in Unity
Solution 1:
Usually restarting unity helps. You can do this by Alt+F2 and then typing:
unity --replace
Note: Don't execute this command in a terminal otherwise unity will be killed, when the terminal is closed.
This is of course not a fix. Just a way to undo the error once it has occurred. I suppose these bugs (and the ones posted in my comments to your question) will be fixed with future updates. There are many bug-reports on launchpad concerning these.
You could also try ans install CompizConfig Settings Manager / sudo apt-get install compizconfig-settings-manager
and play with the setting there. It might or might not help - depending on who you ask.