In-place type conversion of a NumPy array
Given a NumPy array of int32
, how do I convert it to float32
in place? So basically, I would like to do
a = a.astype(numpy.float32)
without copying the array. It is big.
The reason for doing this is that I have two algorithms for the computation of a
. One of them returns an array of int32
, the other returns an array of float32
(and this is inherent to the two different algorithms). All further computations assume that a
is an array of float32
.
Currently I do the conversion in a C function called via ctypes
. Is there a way to do this in Python?
Update: This function only avoids copy if it can, hence this is not the correct answer for this question. unutbu's answer is the right one.
a = a.astype(numpy.float32, copy=False)
numpy astype has a copy flag. Why shouldn't we use it ?
You can make a view with a different dtype, and then copy in-place into the view:
import numpy as np
x = np.arange(10, dtype='int32')
y = x.view('float32')
y[:] = x
print(y)
yields
array([ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], dtype=float32)
To show the conversion was in-place, note that copying from x
to y
altered x
:
print(x)
prints
array([ 0, 1065353216, 1073741824, 1077936128, 1082130432,
1084227584, 1086324736, 1088421888, 1090519040, 1091567616])
You can change the array type without converting like this:
a.dtype = numpy.float32
but first you have to change all the integers to something that will be interpreted as the corresponding float. A very slow way to do this would be to use python's struct
module like this:
def toi(i):
return struct.unpack('i',struct.pack('f',float(i)))[0]
...applied to each member of your array.
But perhaps a faster way would be to utilize numpy's ctypeslib tools (which I am unfamiliar with)
- edit -
Since ctypeslib doesnt seem to work, then I would proceed with the conversion with the typical numpy.astype
method, but proceed in block sizes that are within your memory limits:
a[0:10000] = a[0:10000].astype('float32').view('int32')
...then change the dtype when done.
Here is a function that accomplishes the task for any compatible dtypes (only works for dtypes with same-sized items) and handles arbitrarily-shaped arrays with user-control over block size:
import numpy
def astype_inplace(a, dtype, blocksize=10000):
oldtype = a.dtype
newtype = numpy.dtype(dtype)
assert oldtype.itemsize is newtype.itemsize
for idx in xrange(0, a.size, blocksize):
a.flat[idx:idx + blocksize] = \
a.flat[idx:idx + blocksize].astype(newtype).view(oldtype)
a.dtype = newtype
a = numpy.random.randint(100,size=100).reshape((10,10))
print a
astype_inplace(a, 'float32')
print a