sklearn pipeline - how to apply different transformations on different columns

The way I usually do it is with a FeatureUnion, using a FunctionTransformer to pull out the relevant columns.

Important notes:

• You have to define your functions with def since annoyingly you can't use lambda or partial in FunctionTransformer if you want to pickle your model

• You need to initialize FunctionTransformer with validate=False

Something like this:

from sklearn.pipeline import make_union, make_pipeline
from sklearn.preprocessing import FunctionTransformer

def get_text_cols(df):
    return df[['name', 'fruit']]

def get_num_cols(df):
    return df[['height','age']]

vec = make_union(*[
    make_pipeline(FunctionTransformer(get_text_cols, validate=False), LabelEncoder()))),
    make_pipeline(FunctionTransformer(get_num_cols, validate=False), MinMaxScaler())))
])

Since v0.20, you can use ColumnTransformer to accomplish this.

An Example of ColumnTransformer might help you:

# FOREGOING TRANSFORMATIONS ON 'data' ...
# filter data
data = data[data['county'].isin(COUNTIES_OF_INTEREST)]

# define the feature encoding of the data
impute_and_one_hot_encode = Pipeline([
        ('impute', SimpleImputer(strategy='most_frequent')),
        ('encode', OneHotEncoder(sparse=False, handle_unknown='ignore'))
    ])

featurisation = ColumnTransformer(transformers=[
    ("impute_and_one_hot_encode", impute_and_one_hot_encode, ['smoker', 'county', 'race']),
    ('word2vec', MyW2VTransformer(min_count=2), ['last_name']),
    ('numeric', StandardScaler(), ['num_children', 'income'])
])

# define the training pipeline for the model
neural_net = KerasClassifier(build_fn=create_model, epochs=10, batch_size=1, verbose=0, input_dim=109)
pipeline = Pipeline([
    ('features', featurisation),
    ('learner', neural_net)])

# train-test split
train_data, test_data = train_test_split(data, random_state=0)
# model training
model = pipeline.fit(train_data, train_data['label'])

You can find the entire code under: https://github.com/stefan-grafberger/mlinspect/blob/19ca0d6ae8672249891835190c9e2d9d3c14f28f/example_pipelines/healthcare/healthcare.py