How can I remove a portion of from the middle of a movie?
Solution 1:
You can use Quicktime 10.x to split the movie into multiple clips, and then trim the individual clips. When you're done editing the individual clips and you save/export the movie, you get exactly what you want: one single, continuous movie, sans the parts you trimmed.
Split a movie into clips
In QuickTime Player, drag the playhead (the small diamond) in the timeline to the location where you want to split your movie.
Choose Edit > Split Clip.
Your movie splits into two clips.To split one of the clips in two, select the clip, drag the playhead (now represented by a red vertical line) to the location where you want to split the clip, and then choose Edit > Split Clip.
Your movie is now split into three clips.To continue splitting clips, repeat step three.
When you’re done splitting clips, you can rearrange your clips or click Done.
https://support.apple.com/kb/PH5884
I haven't investigated it, but there may be an analogous AppleScript API for working with clips.
Solution 2:
Check the amazing video here, he explains how to use Cmd + Y to do the clipping from the middle portion. It's same as Matt's answer, but visually explianed. https://www.youtube.com/watch?v=W7NrlhZin4M