How to find which columns contain any NaN value in Pandas dataframe

UPDATE: using Pandas 0.22.0

Newer Pandas versions have new methods 'DataFrame.isna()' and 'DataFrame.notna()'

In [71]: df
Out[71]:
     a    b  c
0  NaN  7.0  0
1  0.0  NaN  4
2  2.0  NaN  4
3  1.0  7.0  0
4  1.0  3.0  9
5  7.0  4.0  9
6  2.0  6.0  9
7  9.0  6.0  4
8  3.0  0.0  9
9  9.0  0.0  1

In [72]: df.isna().any()
Out[72]:
a     True
b     True
c    False
dtype: bool

as list of columns:

In [74]: df.columns[df.isna().any()].tolist()
Out[74]: ['a', 'b']

to select those columns (containing at least one NaN value):

In [73]: df.loc[:, df.isna().any()]
Out[73]:
     a    b
0  NaN  7.0
1  0.0  NaN
2  2.0  NaN
3  1.0  7.0
4  1.0  3.0
5  7.0  4.0
6  2.0  6.0
7  9.0  6.0
8  3.0  0.0
9  9.0  0.0

OLD answer:

Try to use isnull():

In [97]: df
Out[97]:
     a    b  c
0  NaN  7.0  0
1  0.0  NaN  4
2  2.0  NaN  4
3  1.0  7.0  0
4  1.0  3.0  9
5  7.0  4.0  9
6  2.0  6.0  9
7  9.0  6.0  4
8  3.0  0.0  9
9  9.0  0.0  1

In [98]: pd.isnull(df).sum() > 0
Out[98]:
a     True
b     True
c    False
dtype: bool

or as @root proposed clearer version:

In [5]: df.isnull().any()
Out[5]:
a     True
b     True
c    False
dtype: bool

In [7]: df.columns[df.isnull().any()].tolist()
Out[7]: ['a', 'b']

to select a subset - all columns containing at least one NaN value:

In [31]: df.loc[:, df.isnull().any()]
Out[31]:
     a    b
0  NaN  7.0
1  0.0  NaN
2  2.0  NaN
3  1.0  7.0
4  1.0  3.0
5  7.0  4.0
6  2.0  6.0
7  9.0  6.0
8  3.0  0.0
9  9.0  0.0

You can use df.isnull().sum(). It shows all columns and the total NaNs of each feature.


I had a problem where I had to many columns to visually inspect on the screen so a shortlist comp that filters and returns the offending columns is

nan_cols = [i for i in df.columns if df[i].isnull().any()]

if that's helpful to anyone

Adding to that if you want to filter out columns having more nan values than a threshold, say 85% then use

nan_cols85 = [i for i in df.columns if df[i].isnull().sum() > 0.85*len(data)]