Passing IPython variables as arguments to bash commands

How do I execute a bash command from Ipython/Jupyter notebook passing the value of a python variable as an argument like in this example:

py_var="foo"
!grep py_var bar.txt

(obviously I want to grep for foo and not the literal string py_var)

Solution 1:

Prefix your variable names with a $.

Example

Say you want to copy a file file1 to a path stored in a python variable named dir_pth:

dir_path = "/home/foo/bar"
!cp file1 $dir_path

from Ipython or Jupyter notebook

EDIT

Thanks to the suggestion from Catbuilts, if you want to concatenate multiple strings to form the path, use {..} instead of $..$. A general solution that works in both situations is to stick with {..}

dir_path = "/home/foo/bar"
!cp file1 {dir_path}

And if you want to concatinate another string sub_dir to your path, then:

!cp file1 {dir_path + sub_dir}

EDIT 2

For a related discussion on the use of raw strings (prefixed with r) to pass the variables, see Passing Ipython variables as string arguments to shell command

Solution 2:

You cans use this syntax too:

path = "../_data/"
filename = "titanicdata.htm"
! less {path + filename}

Solution 3:

As @Catbuilts points out, $'s are problematic. To make it more explicit and not bury the key example, try the following:

afile='afile.txt'
!echo afile
!echo $PWD
!echo $PWD/{afile}
!echo {pwd+'/'+afile}

And you get:

afile.txt
/Users/user/Documents/adir
/Users/user/Documents/adir/{afile}
/Users/user/Documents/adir/afile.txt