only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
I believe your problem is this: in your while loop, n is divided by 2, but never cast as an integer again, so it becomes a float at some point. It is then added onto y, which is then a float too, and that gives you the warning.
You can use // instead of single /. That converts to int directly.
put a int infront of the all the voxelCoord's...Like this below :
patch = numpyImage [int(voxelCoord[0]),int(voxelCoord[1])- int(voxelWidth/2):int(voxelCoord[1])+int(voxelWidth/2),int(voxelCoord[2])-int(voxelWidth/2):int(voxelCoord[2])+int(voxelWidth/2)]