Pass a data.frame column name to a function
You can just use the column name directly:
df <- data.frame(A=1:10, B=2:11, C=3:12)
fun1 <- function(x, column){
max(x[,column])
}
fun1(df, "B")
fun1(df, c("B","A"))
There's no need to use substitute, eval, etc.
You can even pass the desired function as a parameter:
fun1 <- function(x, column, fn) {
fn(x[,column])
}
fun1(df, "B", max)
Alternatively, using [[
also works for selecting a single column at a time:
df <- data.frame(A=1:10, B=2:11, C=3:12)
fun1 <- function(x, column){
max(x[[column]])
}
fun1(df, "B")
This answer will cover many of the same elements as existing answers, but this issue (passing column names to functions) comes up often enough that I wanted there to be an answer that covered things a little more comprehensively.
Suppose we have a very simple data frame:
dat <- data.frame(x = 1:4,
y = 5:8)
and we'd like to write a function that creates a new column z
that is the sum of columns x
and y
.
A very common stumbling block here is that a natural (but incorrect) attempt often looks like this:
foo <- function(df,col_name,col1,col2){
df$col_name <- df$col1 + df$col2
df
}
#Call foo() like this:
foo(dat,z,x,y)
The problem here is that df$col1
doesn't evaluate the expression col1
. It simply looks for a column in df
literally called col1
. This behavior is described in ?Extract
under the section "Recursive (list-like) Objects".
The simplest, and most often recommended solution is simply switch from $
to [[
and pass the function arguments as strings:
new_column1 <- function(df,col_name,col1,col2){
#Create new column col_name as sum of col1 and col2
df[[col_name]] <- df[[col1]] + df[[col2]]
df
}
> new_column1(dat,"z","x","y")
x y z
1 1 5 6
2 2 6 8
3 3 7 10
4 4 8 12
This is often considered "best practice" since it is the method that is hardest to screw up. Passing the column names as strings is about as unambiguous as you can get.
The following two options are more advanced. Many popular packages make use of these kinds of techniques, but using them well requires more care and skill, as they can introduce subtle complexities and unanticipated points of failure. This section of Hadley's Advanced R book is an excellent reference for some of these issues.
If you really want to save the user from typing all those quotes, one option might be to convert bare, unquoted column names to strings using deparse(substitute())
:
new_column2 <- function(df,col_name,col1,col2){
col_name <- deparse(substitute(col_name))
col1 <- deparse(substitute(col1))
col2 <- deparse(substitute(col2))
df[[col_name]] <- df[[col1]] + df[[col2]]
df
}
> new_column2(dat,z,x,y)
x y z
1 1 5 6
2 2 6 8
3 3 7 10
4 4 8 12
This is, frankly, a bit silly probably, since we're really doing the same thing as in new_column1
, just with a bunch of extra work to convert bare names to strings.
Finally, if we want to get really fancy, we might decide that rather than passing in the names of two columns to add, we'd like to be more flexible and allow for other combinations of two variables. In that case we'd likely resort to using eval()
on an expression involving the two columns:
new_column3 <- function(df,col_name,expr){
col_name <- deparse(substitute(col_name))
df[[col_name]] <- eval(substitute(expr),df,parent.frame())
df
}
Just for fun, I'm still using deparse(substitute())
for the name of the new column. Here, all of the following will work:
> new_column3(dat,z,x+y)
x y z
1 1 5 6
2 2 6 8
3 3 7 10
4 4 8 12
> new_column3(dat,z,x-y)
x y z
1 1 5 -4
2 2 6 -4
3 3 7 -4
4 4 8 -4
> new_column3(dat,z,x*y)
x y z
1 1 5 5
2 2 6 12
3 3 7 21
4 4 8 32
So the short answer is basically: pass data.frame column names as strings and use [[
to select single columns. Only start delving into eval
, substitute
, etc. if you really know what you're doing.