Split a generator into chunks without pre-walking it
(This question is related to this one and this one, but those are pre-walking the generator, which is exactly what I want to avoid)
I would like to split a generator in chunks. The requirements are:
- do not pad the chunks: if the number of remaining elements is less than the chunk size, the last chunk must be smaller.
- do not walk the generator beforehand: computing the elements is expensive, and it must only be done by the consuming function, not by the chunker
- which means, of course: do not accumulate in memory (no lists)
I have tried the following code:
def head(iterable, max=10):
for cnt, el in enumerate(iterable):
yield el
if cnt >= max:
break
def chunks(iterable, size=10):
i = iter(iterable)
while True:
yield head(i, size)
# Sample generator: the real data is much more complex, and expensive to compute
els = xrange(7)
for n, chunk in enumerate(chunks(els, 3)):
for el in chunk:
print 'Chunk %3d, value %d' % (n, el)
And this somehow works:
Chunk 0, value 0
Chunk 0, value 1
Chunk 0, value 2
Chunk 1, value 3
Chunk 1, value 4
Chunk 1, value 5
Chunk 2, value 6
^CTraceback (most recent call last):
File "xxxx.py", line 15, in <module>
for el in chunk:
File "xxxx.py", line 2, in head
for cnt, el in enumerate(iterable):
KeyboardInterrupt
Buuuut ... it never stops (I have to press ^C
) because of the while True
. I would like to stop that loop whenever the generator has been consumed, but I do not know how to detect that situation. I have tried raising an Exception:
class NoMoreData(Exception):
pass
def head(iterable, max=10):
for cnt, el in enumerate(iterable):
yield el
if cnt >= max:
break
if cnt == 0 : raise NoMoreData()
def chunks(iterable, size=10):
i = iter(iterable)
while True:
try:
yield head(i, size)
except NoMoreData:
break
# Sample generator: the real data is much more complex, and expensive to compute
els = xrange(7)
for n, chunk in enumerate(chunks(els, 2)):
for el in chunk:
print 'Chunk %3d, value %d' % (n, el)
But then the exception is only raised in the context of the consumer, which is not what I want (I want to keep the consumer code clean)
Chunk 0, value 0
Chunk 0, value 1
Chunk 0, value 2
Chunk 1, value 3
Chunk 1, value 4
Chunk 1, value 5
Chunk 2, value 6
Traceback (most recent call last):
File "xxxx.py", line 22, in <module>
for el in chunk:
File "xxxx.py", line 9, in head
if cnt == 0 : raise NoMoreData
__main__.NoMoreData()
How can I detect that the generator is exhausted in the chunks
function, without walking it?
One way would be to peek at the first element, if any, and then create and return the actual generator.
def head(iterable, max=10):
first = next(iterable) # raise exception when depleted
def head_inner():
yield first # yield the extracted first element
for cnt, el in enumerate(iterable):
yield el
if cnt + 1 >= max: # cnt + 1 to include first
break
return head_inner()
Just use this in your chunk
generator and catch the StopIteration
exception like you did with your custom exception.
Update: Here's another version, using itertools.islice
to replace most of the head
function, and a for
loop. This simple for
loop in fact does exactly the same thing as that unwieldy while-try-next-except-break
construct in the original code, so the result is much more readable.
def chunks(iterable, size=10):
iterator = iter(iterable)
for first in iterator: # stops when iterator is depleted
def chunk(): # construct generator for next chunk
yield first # yield element from for loop
for more in islice(iterator, size - 1):
yield more # yield more elements from the iterator
yield chunk() # in outer generator, yield next chunk
And we can get even shorter than that, using itertools.chain
to replace the inner generator:
def chunks(iterable, size=10):
iterator = iter(iterable)
for first in iterator:
yield chain([first], islice(iterator, size - 1))
Another way to create groups/chunks and not prewalk the generator is using itertools.groupby
on a key function that uses an itertools.count
object. Since the count
object is independent of the iterable, the chunks can be easily generated without any knowledge of what the iterable holds.
Every iteration of groupby
calls the next
method of the count
object and generates a group/chunk key (followed by items in the chunk) by doing an integer division of the current count value by the size of the chunk.
from itertools import groupby, count
def chunks(iterable, size=10):
c = count()
for _, g in groupby(iterable, lambda _: next(c)//size):
yield g
Each group/chunk g
yielded by the generator function is an iterator. However, since groupby
uses a shared iterator for all groups, the group iterators cannot be stored in a list or any container, each group iterator should be consumed before the next.
Even faster solution (new as of 2021-12-02) for smaller n
:
When the chunk size is typically small, the fastest solution is this one, adapted from rhettg's answer:
from itertools import takewhile, zip_longest
def chunker(n, iterable):
'''chunker(3, 'ABCDEFG') --> ('A', 'B', 'C'), ('D', 'E', 'F'), ('G',)'''
args = (iter(iterable),) * n
for x in zip_longest(*args, fillvalue=fillvalue):
if x[-1] is fillvalue:
# takewhile optimizes a bit for when n is large and the final
# group is small; at the cost of a little performance, you can
# avoid the takewhile import and simplify to:
# yield tuple(v for v in x if v is not fillvalue)
yield tuple(takewhile(lambda v: v is not fillvalue, x))
else:
yield x
Old answer (still fast, but loses to above by a little in basically all cases, and by a roughly factor of 2x in common cases):
Fastest possible solution I could come up with, thanks to (in CPython) using purely C-level builtins. By doing so, no Python byte code is needed to produce each chunk (unless the underlying generator is implemented in Python) which has a huge performance benefit. It does walk each chunk before returning it, but it doesn't do any pre-walking beyond the chunk it's about to return:
# Py2 only to get generator based map
from future_builtins import map
from itertools import islice, repeat, starmap, takewhile
# operator.truth is *significantly* faster than bool for the case of
# exactly one positional argument prior to 3.10; in 3.10+, you can
# just use bool (which is trivially faster than truth)
from operator import truth
def chunker(n, iterable): # n is size of each chunk; last chunk may be smaller
return takewhile(truth, map(tuple, starmap(islice, repeat((iter(iterable), n)))))
Since that's a bit dense, the spread out version for illustration:
def chunker(n, iterable):
iterable = iter(iterable)
while True:
x = tuple(islice(iterable, n))
if not x:
return
yield x
Wrapping a call to chunker
in enumerate
would let you number the chunks if it's needed.
more-itertools has provided chunked and ichunked that can achieve the goal, it is mentioned on the Python 3 itertools document page.