WUBI installed Ubuntu not showing up at boot menu after Windows reinstallation

Solution 1:

  1. Copy root.disk file (this contains all your Ubuntu data) from your Ubuntu installation drive using live USB or anything.

  2. Re-install Ubuntu into the same partition (drive) with WUBI.

  3. Once installation is complete, copy/move back the root.disk file from the backup you made.

This should solve your issue.