Super bad audio quality from iPhone 6s Plus speaker

Solution 1:

I saw the same problem with my iPhone 6s Plus. I think it may be an issue with the Skype app since my FaceTime works without any issue.

Solution 2:

Apple generally give 72 hours for a Dead On Arrival (DOA) or Early Life Failure (ELF) swaps.

I would take it to an Apple retail store as soon as possible to have them test it.