How did 'pummel' evolve from the meaning of apple?
Solution 1:
Visually quite obvious.
Pummel someone with the (apple shaped) ornamental knob at the end of your sword.
Albion Talhoffer Medieval Sword (pommel)
source: WikiMedia
A standard movement in infighting
(source: aemma.org)
Because my sword has received a hit and because of my grab, I'll hit your face with my pommel.
source: The Sign of the Sword
Solution 2:
The Etymonline entry that you cite is for pommel, the noun meaning "the ball at the end of a sword". Pummel, the verb, appears to mean to strike with, or as with, a pommel.
Johnson's A dictionary of the English Language of 1768 has an entry for pummel, but only as a variant of pommel (as a noun). It defines pommel both as a noun, and as the verb we now know as pummel:
To POMMEL: To beat black and blue; to bruise; to punch.
(Entry)
And Johnson and Walker's Dictionary of the English Language, published in 1828, has the following:
To POMMEL: To beat with anything thick or bulky; to bruise; to punch.
(Entry; emphasis added)