Media keys behaving like function keys
Solution 1:
Ugh. I hate when the solution is "it just stopped happening all of a sudden"... but a firmware update came out and I installed it, and now my keys back! Yay =D
If I learn anything about what exactly happened here I'll post my findings.
Solution 2:
tell application "System Preferences"
reveal anchor "keyboardTab" of pane "com.apple.preference.keyboard"
end tell
tell application "System Events" to tell process "System Preferences"
click checkbox 1 of tab group 1 of window 1
end tell
quit application "System Preferences"
I have also found one quick fix from here