Meaning of abbreviated vulgarity
Solution 1:
The Free Dictionary suggests that
f**king A
an emphatic exclamation of approval
which indicates that the letter A can stand for agree, assent, approve, acquiesce, absolutely, or anything that expresses approval.
And Wiktionary suggests that
f**ing A
an expression of triumph, or joy. Usually in response to a piece of unexpected positive news.
which means the letter A can also stand for awesome, amazing, astounding, astonishing, awe-inspiring, appreciate, etc.
If the expression "F**king A" is used as a noun to describe a person,
He is a f**king A.
the letter A is probably an abbreviation of the term a**hole (instead of ass) as it is more commonly used with the adjective f**king.
And if the expression "F**king A" is used as an exclamation to express anger or surprise,
Aw, f**king A!
it can refer to "f**king a**hole" as mentioned above,
Aw, f**king A! (He/she ruined my plan!)
or it can simply mean that the person is too lazy to finish his sentence.
Aw, f**king a ...! (it can be f**king a dog, f**king a balloon or f**king anything you want!)
F**king A is also a play written by American playwright Suzan-Lori Parks.
F**king A is inspired by the novel The Scarlet Letter, written by Nathaniel Hawthorne in 1850. F**king A shares several similarities with this work; both of the main characters are named Hester and are strong females with an unwavering love for their illegitimate child. Both Hesters also bear the letter “A” as a symbol of how society defines them: the modern Hester is an abortionist, the original is branded for adultery.
The idea for the play came to Parks while she was canoeing with a friend, when Parks yelled out, "I'm going to write a play, a riff on The Scarlet Letter, and I'm going to call it F**king A. Ha, ha, ha!" While Parks was initially joking, she couldn’t get the idea out of her mind. She began working on the play, but after 4 years of drafts and rewrites she still hadn’t come up with a workable plot. She threw out everything except the title and the name Hester, and considered throwing out the latter as well, but the voice of Hester filled her mind and persuaded her to retain it and write "her" story.
So when a person mentions F**king A, he/she may be talking about this play.
John: Do you know what I watched in the theater yesterday?
Sam: F**king A?
John: Yeah, F**king A.
Solution 2:
Fucking-A has the following entry in the book, The F-Word:
fucking-A adverb, adjective, interjection, & infix [FUCKING + a (origin unknown; perhaps taken from a phrase such as "you're fucking A-number-one right!")]
1.a. Especially Military. yes, indeed; absolutely (correct); especially in phrase: [you're] fucking-A, occasionally with elaborations, especially fucking-A [well] told.
1948 N. Mailer Naked & Dead 21 [refers to WWII]: "You're fuggin ay," Gallegher snorted.
IMO, if a book dedicated to the word says that the origin/meaning is unknown, it very likely is.
Another theory floating about on the Internet which suggests a military origin reckons that the A might be short for affirmative.